Home
Overview
Manual
Versions
Download
Contact
Input (mandatory)
Genome:
Human
Mouse
D. Melanogaster
Other
Database assembly:
Dec. 2013 (GRCh38/hg38)
Feb. 2009 (GRCh37/hg19)
Mar. 2006 (NCBI36/hg18)
Query sequences/coordinates
In FASTA format
(view example)
or genomic coordinates
(view example)
respectively.
Paste your sequences/coordinates here:
Or, upload a file:
Motif selection (mandatory)
Search RBPmap motifs database:
(To view the search results, the browser's pop-up blocking should be turned off)
Enter an RNA binding protein name, symbol or common alias:
Or,
Click here
to select motifs from RBPmap full list.
Choose your own motifs (optional):
Enter a consensus motif
(4-10 bp long, IUPAC symbols only)
:
1. Motif:
Protein name:
Upload a probability matrix file
(
in MEME format
)
:
Advanced options (optional)
Stringency level:
Default stringency
High stringency
Apply conservation filter
Note: by default, this filter is not applied, since it may be time-consuming (depending on the number of input sequences). We recommend applying it as a means to increase the specificity of the results, especially in cases of repetitive motifs.
Job submission options (optional)
E-mail address:
(A link to the results will be sent to this address)
Enter a name for the current job:
Sample data
If you use RBPmap please cite:
Paz I, Kosti I, Ares M Jr, Cline M, Mandel-Gutfreund Y. (2014) RBPmap: a web server for mapping binding sites of RNA-binding proteins. Nucleic Acids Res., 2014.
[PDF]