RBPmap - Motifs Analysis and Prediction of RNA Binding Proteins

Version 1.2
(What's new)

Input (mandatory)

Genome: Database assembly:

Query sequences/coordinates In FASTA format (view example) or genomic coordinates (view example) respectively.

Paste your sequences/coordinates here:

Or, upload a file:

Motif selection (mandatory)

Search RBPmap motifs database: (To view the search results, the browser's pop-up blocking should be turned off)

Enter an RNA binding protein name, symbol or common alias:

Or, Click here to select motifs from RBPmap full list.

Choose your own motifs (optional):

Enter a consensus motif (4-10 bp long, IUPAC symbols only):

1. Motif: Protein name:

Upload a probability matrix file (in MEME format):

Advanced options (optional)

Job submission options (optional)

If you use RBPmap please cite: Paz I, Kosti I, Ares M Jr, Cline M, Mandel-Gutfreund Y. (2014) RBPmap: a web server for mapping binding sites of RNA-binding proteins. Nucleic Acids Res., 2014. [PDF]

This web site is supported by United States – Israel Binational Science Foundation

Website created by Inbal Paz. Last update: 01/03/2021.