Input (mandatory)
Genome:       Database assembly:
Query sequences/coordinates In FASTA format (view example) or genomic coordinates (view example) respectively.
Paste your sequences/coordinates here:
Or, upload a file:
Motif selection (mandatory)
Search RBPmap motifs database: (To view the search results, the browser's pop-up blocking should be turned off)
Enter an RNA binding protein name, symbol or common alias:
Or, Click here to select motifs from RBPmap full list.
Choose your own motifs (optional):
Enter a consensus motif (4-10 bp long, IUPAC symbols only):
1.  Motif:     Protein name:
Upload a probability matrix file (in MEME format):  
If you use RBPmap please cite: Paz I, Kosti I, Ares M Jr, Cline M, Mandel-Gutfreund Y. (2014) RBPmap: a web server for mapping binding sites of RNA-binding proteins. Nucleic Acids Res., 2014. [PDF]