RBPmap - Motifs Analysis and Prediction of RNA Binding Proteins

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Input (mandatory)

Genome: Database assembly:

Query sequences/coordinates In FASTA format (view example) or genomic coordinates (view example) respectively.

Paste your sequences/coordinates here:

Or, upload a file:

Motif selection (mandatory)

Search RBPmap motifs database: (To view the search results, the browser's pop-up blocking should be turned off)

Enter an RNA binding protein name, symbol or common alias:

Or, Click here to select motifs from RBPmap full list.

Choose your own motifs (optional):

Enter a consensus motif (4-10 bp long, IUPAC symbols only):

1. Motif: Protein name:

Upload a probability matrix file (in MEME format):

Advanced options (optional)

Job submission options (optional)

Sample data

Note: RBPmap is currently under construction, some utilities may not be fully functional.
We are actively working to restore full functionality as quickly as possible and strongly apologize for the inconvenience.
For inquiries please contact us: yaelmg@technion.ac.il
If you use RBPmap please cite: Paz I, Kosti I, Ares M Jr, Cline M, Mandel-Gutfreund Y. (2014) RBPmap: a web server for mapping binding sites of RNA-binding proteins. Nucleic Acids Res., 2014. [PDF]